Informatics in Medicine Unlocked
○ Elsevier BV
Preprints posted in the last 30 days, ranked by how well they match Informatics in Medicine Unlocked's content profile, based on 21 papers previously published here. The average preprint has a 0.04% match score for this journal, so anything above that is already an above-average fit.
Usuzaki, T.; Matsunbo, E.; Inamori, R.
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Despite the remarkable progress of artificial intelligence represented by large language models, how AI technologies can contribute to the construction of evidence in evidence-based medicine (EBM) remains an overlooked issue. Now, we need an AI that can be compatible with EBM. In the present paper, we aim to propose an example analysis that may contribute to this approach using variable Vision Transformer.
Hou, J.; Yi, X.; Li, C.; Li, J.; Cao, H.; Lu, Q.; Yu, X.
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Predicting response to induction chemotherapy (IC) and overall survival (OS) is critical for optimizing treatment in patients with locally advanced nasopharyngeal carcinoma (LANPC). This study aimed to develop and validate a multi-task deep learning model integrating pretreatment MRI and whole slide images (WSIs) to predict IC response and OS in LANPC. Pretreatment MRI and WSIs from 404 patients with LANPC were retrospectively collected to construct a multi-task model (MoEMIL) for the simultaneous prediction of early IC response and OS. MoEMIL employed multi-instance learning to process WSIs, PyRadiomics and a convolutional neural network (ResNet50) to extract MRI features, and fused multimodal features through a multi-gate mixture-of-experts architecture. Clustering-constrained attention multiple instance learning and gradient-weighted class activation mapping were applied for visualization and interpretation. MoEMIL effectively stratified patients into good and poor IC response groups, achieving areas under the curve of 0.917, 0.869, and 0.801 in the train, validation, and test sets, respectively, and outperformed the deep learning radiomics model, the pathomics model and TNM staging. The model also stratified patients into high- and low-risk OS groups (P < 0.05). MoEMIL shows promise as a decision-support tool for early IC response prediction and prognostication in LANPC. Author SummaryWe have developed a deep learning model that integrates two types of medical images, including magnetic resonance imaging (MRI) and digital pathological slices, to simultaneously predict response to induction chemotherapy and prognosis in patients with locally advanced nasopharyngeal carcinoma. Current treatment decisions primarily rely on traditional tumor staging (TNM), which often fails to comprehensively reflect the complexity of the disease. Our model, named MoEMIL, was trained and tested on data from 404 patients across two hospitals and consistently outperformed both single-model approaches and TNM staging methods. By identifying patients who exhibit poor response to induction chemotherapy or higher prognostic risk, our tool can assist clinicians in achieving personalized treatment, enabling intensified management for high-risk patients and avoiding unnecessary side effects for low-risk patients. Additionally, we visualize the models reasoning process through heat map generation, which highlights the image regions exerting the greatest influence on prediction outcomes. This work represents a step toward more precise treatment for nasopharyngeal carcinoma; however, larger-scale prospective studies are required before the model can be integrated into routine clinical practice.
Tan, J.; Tang, P. H.
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Background: Paediatric pneumonia is a leading cause of childhood morbidity and mortality worldwide. Chest X-rays (CXR) are an important diagnostic tool in the diagnosis of pneumonia, but shortages in specialist radiology services lead to clinically significant delays in CXR reporting. The ability to communicate findings both to clinicians and laypersons allows MLLMs to be deployed throughout clinical workflows, from image analysis to patient communication. However, MLLMs currently underperform state-of-the-art deep learning classifiers. Objective: To evaluate the diagnostic accuracy of ensemble strategies with MLLMs compared to the baseline average agent for paediatric radiological pneumonia detection. Methods: We conducted a retrospective cohort study using paediatric CXRs from two independent hospital datasets totalling 2300 CXRs. Fifteen MedGemma-4B-it agents independently classified each CXR into five pneumonia likelihood categories. Majority voting, soft voting, and GPTOSS-20B aggregation were compared against the average agent performance. The primary metric evaluated was OvR AUROC. Secondary metrics included accuracy, sensitivity, specificity, F1-score, Cohen's kappa, and OvO AUROC. Results: Soft voting achieved improvements in OvR AUROC (p_balanced = 0.0002, p_real-world = 0.0003), accuracy (p_balanced = 0.0008, p_real-world < 0.0001), Cohen's Kappa (p_balanced = 0.0006, p_real-world = 0.0054) and OvO AUROC (p_balanced < 0.0001, p_real-world = 0.0011) across both datasets, and a superior F1-value (pbalanced = 0.0028) for the balanced dataset. Conclusion: Soft voting enhances MedGemma's diagnostic discriminatory performance for paediatric radiological pneumonia detection. Our system enables privacy-preserving, near real-time clinical decision support with explainable outputs, having potential for integration into emergency departments. Our system's high specificity supports triage by flagging high-risk radiological pneumonia cases.
Altinok, O.; Ho, W. L. J.; Robinson, L.; Goldgof, D.; Hall, L. O.; Guvenis, A.; Schabath, M. B.
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Objectives: Among surgically resected non-small cell lung cancer (NSCLC) patients with similar stage and histopathological characteristics, there is variability in patient outcomes which highlights urgency of identifying biomarkers to predict recurrence. The goal of this study was to systematically develop a pre-surgical CT-based habitat-based radiomics classifier to predict recurrence-of-risk in NSCLC. Methods: This study included 293 NSCLC patients with surgically resected stage IA-IIIA disease that were randomly divided into a training (n = 195) and test cohorts (n = 98). From pre-surgical CT images, tumor habitats were generated using two-level unsupervised clustering and then radiomic features were calculated from the intratumoral region and habitat-defined subregions. Using ridge-regularized logistic regression, separate classifiers were developed to predict 3-year recurrence using intratumoral radiomics, habitat-based radiomics, and a combined model (intratumoral and habitat) which was generated using a stacked learning framework. For each classifier, probability of recurrence was calculated for each patient then numerous statistical and machine learning approaches were utilized to stratify patients for recurrence-free survival. Results: The combined radiomics classifier yielded a superior AUC (0.82) compared to the intratumoral (AUC = 0.75) and habitat radiomics (AUC = 0.81) models. When the classifiers were used to stratify high- versus low-risk patients utilizing a cut-point identified by decision tree analysis, high-risk patients were yielded the largest risk estimate (HR = 8.43; 95% CI 2.47 - 28.81) compared to the habitat (HR = 5.41; 95% CI 2.08 - 14.09) and intratumoral radiomics (HR = 3.54; 95% CI 1.45 - 8.66) models. SHAP analyses indicated that habitat-derived information contributed most strongly to recurrence prediction. Conclusions: This study revealed that habitat-based radiomics provided superior statistical performance than intratumoral radiomics for predicting recurrence in NSCLC.
Romano, D. J.; Roberts, A. G.; Weppner, B.; Zhang, Q.; John, M.; Hu, R.; Sisman, M.; Kovanlikaya, I.; Chiang, G. C.; Spincemaille, P.; Wang, Y.
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Purpose: To develop a deep neural network-based, AIF-free, perfusion estimation method (QTMnet) for improved performance on glioma classification. Methods: A globally defined arterial input function (AIF) is needed to recover perfusion parameters in the two-compartment exchange model (2CXM). We have developed Quantitative Transport Mapping (QTM) to create an AIF-independent estimation method. QTM estimation can be formulated using deep neural networks trained on synthetic DCE-MRI data (QTMnet). Here, we provide a fluid mechanics-based DCE-MRI simulation with exchange between the capillaries and extravascular extracellular space. We implemented tumor ROI generation to morphologically characterize tissue perfusion. We compared our QTMnet implementation with 2CXM on 30 glioma human subjects, 15 of which had low-grade gliomas, and 15 with high-grade glioblastomas. Results: QTMnet outperforms (best AUC: 0.973) traditional 2CXM (best AUC: 0.911) in a glioma grading task. Conclusion: The AIF-independent QTMnet estimation provides a quantitative delineation between low-grade and high-grade gliomas.
Li, J.; Chen, J.; Ling, L.; Tan, Z. L.; Sun, T.; Lin, J.; Chen, S.; Uyama, T.; Zhang, Q.; Liu, Q.; Wu, F.; Wu, W.
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Vitiligo is an acquired pigmentary disorder of the skin and mucus membranes. Previous study has demonstrated that autologous cultured epithelial grafts (ACEG) is an effective treatment for stable vitiligo. However, extraction of full-thickness skin might result in scar formation at donor site, which have hindered the wider application of this technology, especially for patients requiring large-area transplantation. Hair follicle as a source of keratinocyte and melanocyte, could be potential source of cells for preparation of autologous cultured sheet. Through culture system optimization, we have demonstrated maintenance of undifferentiated hair follicle-derived cells in feeder-independent culture system. After expansion, the hair follicle cells were directed to differentiate into a multi-layered, epidermis-like sheet. Cell identity, viability, purity, genomic stability, and antiseptic testing for hair follicle-derived epithelial sheet (HFES) were evaluated to ensure its safety. Immunofluorescence staining showed that basal keratinocytes were the main cell type of the autologous HFES. Optimization of culture conditions leads to increased melanocyte proliferation and functionality. Transcriptomic analysis confirmed upregulation of melanosome maturation genes. The proportions of cells are also similar to composition of cells under physiological conditions. Transplantation of HFES to depigmented areas in patients with stable vitiligo results in skin repigmentation. This technology provides a novel therapeutic option for vitiligo management.
Lukhele, N.; Mostafa, F.
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Objective To develop and evaluate a novel machine learning (ML) framework tailored to a clinical diabetes dataset and to assess whether demographic stratification enhances model performance and interpretability for multiclass diabetes classification. Methods A clinical dataset of 264 patients records was used to classify individuals into non-diabetic, prediabetic and diabetic categories. Several supervised learning models were trained using 80:20 train-test split and optimized using RandomizedSearchCV Model and 10-fold cross validation. Model performance was evaluated using the metrics accuracy, precision, recall and the F1-score. Area under the receiver operating characteristic curve (AUC) was calculated for the best generalizing model. A structured ML framework was developed for this dataset, incorporating preprocessing, model optimization, age stratification analysis age (<35 vs >35 years) and gender. SHAP was developed for model interpretability. Results Ensemble methods demonstrated superior performance in comparison to linear or single-tree approaches, with Gradient Boosting showing the most stable generalization with a test accuracy of 0.981 and stable cross validation accuracy of 0.972. AUC-ROC analysis using Gradient Boosting yielded good discriminative ability across the three diabetes classes: 0.991 (non-diabetic), 0.986 (prediabetic) and 0.972 (diabetic). Stratified analysis showed improved reliability in individuals aged >;35 years (accuracy = 0.94, F1-score = 0.92), while performance in younger individuals was unstable due to small sample size. SHAP analysis identified HbA1c, BMI, and age as dominant predictors. Conclusion This study presents a ML framework integrating age stratified modelling with explainable ML frameworks to improve interpretability. The findings offer clinically relevant results that can support clinical decision-making systems, individualized risk assessment, and potential applications for targeted intervention in diabetes progression.
Sivakumar, E.; Anand, A.
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Computer vision and deep learning techniques, including convolutional neural networks (CNNs) and transformers, have increased the performance of medical image classification systems. However, training deep learning models using medical images is a challenging task that necessitates a substantial amount of annotated data. In this paper, we implement data augmentation strategies to tackle dataset imbalance in the VinDr-SpineXR dataset, which has a lower number of spine abnormality X-ray images compared to normal spine X-ray images. Geometric transformations and synthetic image generation using Generative Adversarial Networks are explored and applied to the abnormal classes of the dataset, and classifier performance is validated using VGG-16 and InceptionNet to identify the most effective augmentation technique. Additionally, we introduce a hybrid augmentation technique that addresses class imbalance, reduces computational overhead relative to a GAN-only approach, and achieves ~99% validation accuracy with both classifiers across all three case studies. Keywords: Data augmentation, Generative Adversarial Network, VGG-16, InceptionNet, Class imbalance, Computer vision, Spine X-ray, Radiology.
Lee, H.; Kim, H.
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Background: CD276 has been proposed as a candidate gene associated with the biological characteristics of meningioma, but its predictive position and interpretive significance within a transcriptomic classifier have not yet been clearly established. Accordingly, this study aimed to evaluate CD276 stepwise across internal model development, external validation, calibration, decision-analytic assessment, feature stability, and robustness analyses using public transcriptomic cohorts. Methods: The analyses in this study were organized into two interconnected notebooks. In Notebook A, we reconstructed the internal training cohort (GSE183653), evaluated the CD276 single-gene signal, and then developed a transcriptome-wide multigene classifier. We also performed permutation importance, bootstrap confidence interval, label permutation test, repeated cross-validation, CD276 ablation, and internal calibration analyses. In Notebook B, we reproduced the external validation cohort (GSE136661) in a fixed common-gene space, applied train-only recalibration and train-only threshold transfer, and extended the interpretation through decision curve analysis, stability analysis, enrichment analysis, and one-factor-at-a-time robustness analysis. Results: The internal training cohort consisted of 185 samples and 58,830 genes, of which 25 were WHO grade III cases. CD276 expression showed a significant association with WHO grade, but the internal discrimination of the CD276-only baseline was limited (ROC-AUC 0.628, average precision 0.323, balanced accuracy 0.540). In contrast, the initial transcriptome-wide model showed ROC-AUC 0.834 and PR-AUC 0.509, and under 5-fold cross-validation, the canonical fulltranscriptome model and the CD276-forced 5,001-feature branch showed mean ROC-AUC/PR-AUC of 0.854/0.564 and 0.855/0.606, respectively, outperforming the CD276-only baseline at 0.644/0.391. CD276 was not included in the initial 5,000-feature filtered set and ranked 900th among 5,001 features even in the forcibly included 5,001-feature branch. In paired ablation analysis, the performance difference attributable to inclusion of CD276 was effectively close to zero (delta ROCAUC 0.000062, delta PR-AUC 0.000056). Internal calibration analysis showed an overconfident probability pattern (Brier score 0.10501, intercept -1.421392, slope 0.413241). In external validation, the fixed multigene pipeline achieved ROC-AUC 0.928 and PR-AUC 0.335. Train-only recalibration improved calibration metrics while preserving discrimination, and decision curve analysis showed threshold-dependent but limited external utility. Stability analysis showed overlap between core-stable genes and high-impact genes, but CD276 was not supported as a dominant stable core feature and remained in the target-of-interest tier. In robustness analysis, some perturbations preserved the primary interpretation, whereas others revealed transform sensitivity or an alternative high-performing feature-space solution. Conclusions: CD276 is a gene of interest associated with meningioma grade, but it was difficult to interpret it as a strong standalone predictor or a dominant stable classifier feature. In this study, the main basis of predictive performance lay not in CD276 alone but in a broader multigene transcriptomic structure, and probability output needed to be interpreted conservatively with calibration taken into account. These findings position CD276 not as a direct single-gene classifier but as a biologymotivated target-of-interest that should be interpreted within a broader transcriptomic program.
Misra, P.; Movva, N. S. V.; Shah, R.
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Purpose/ObjectiveThis study aimed to design and computationally evaluate a synthetic GluN1-mimetic peptide as a decoy to bind and neutralize pathogenic autoantibodies in anti-NMDA receptor (NMDAR) encephalitis, a severe autoimmune neurological disorder affecting approximately 1.5 per million individuals annually. MethodsKey GluN1 epitope residues (351-390 of the amino-terminal domain) were identified from crystallographic evidence and patient-derived antibody binding studies. Multiple peptide variants were rationally designed to mimic the antibody-binding interface. AlphaFold2 was used to predict peptide structures. Rigid-body docking simulations were conducted with HADDOCK 2.4 to model peptide-antibody complexes, and binding affinities were quantified using PRODIGY. A scrambled peptide control was included to establish docking specificity. ResultsThe top-performing peptide demonstrated favorable predicted binding ({Delta}G = -21.5 kcal/mol, Kd = 1.7 x 10-{superscript 1} M) with an average pLDDT score of 90%, a buried surface area of 3,255.5 [A]{superscript 2}, and 18 intermolecular hydrogen bonds. Relative to the scrambled control ({Delta}G = -8.3 kcal/mol), the designed peptide showed substantially stronger predicted binding. Conclusion/ImplicationsThese results support the validity of an epitope-mimicry design strategy and establish a scalable computational framework for prioritizing peptide decoy candidates applicable to other antibody-mediated autoimmune disorders. Experimental validation remains necessary to confirm real-world efficacy.
Duan, Z.; Huang, M.; Peng, Z.; Tu, T.
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Objective: Neuroendoscopy has emerged as a crucial minimally invasive strategy for the treatment of intracranial hemorrhage (ICH). This bibliometric analysis aims to systematically delineate the global research architecture and evolution of neuroendoscopic ICH research over the past two decades. Methods: Relevant publications were retrieved from the Web of Science Core Collection using a reproducible search strategy. Bibliometric tools were applied to analyze contributions from countries, institutions, authors, publications, keywords and journals, enabling the construction of a comprehensive knowledge map and evolutionary framework of this field. Results: A total of 403 articles were identified, involving 2128 authors from 555 institutions across 43 countries. The publication trajectory exhibited fluctuating growth, reflecting the dynamic interplay between clinical demand and technological maturation. China contributed the highest publications and citation impact, followed by the US, jointly anchoring the global influence of the field. The research keywords have evolved from ?intracerebral hemorrhage? and ?initial conservative treatment? to ?augmented reality.? Thematic evolution analysis revealed a clear progression from early emphasis on operative feasibility, safety, and perioperative outcomes toward more rigorous evidence appraisal and the refinement of context-specific clinical indications, accompanied by continuous technological innovation. Conclusion: These findings collectively position neuroendoscopy as a cornerstone of modern ICH management, reshaping clinical strategies toward precision, minimal invasiveness, and multimodal intervention. Future progress will depend on strengthened international collaboration to generate high-quality evidence that supports patient stratification. The integration of emerging technologies, including advanced endoscopic robotics, is expected to further accelerate the translational and clinical landscape of neuroendoscopic ICH therapy.
Hughes, N.; Hogenboom, J.; Carter, R.; Norman, L.; Gouthamchand, V.; Lindner, O.; Connearn, E.; Lobo Gomes, A.; Sikora-Koperska, A.; Rosinska, M.; Pogoda, K.; Wiechno, P.; Jagodzinska-Mucha, P.; Lugowska, I.; Hanebaum, S.; Dekker, A.; van der Graaf, W.; Husson, O.; Wee, L.; Feltbower, R.; Stark, D.
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Background: Population-based cancer registers (PBCR) are important for monitoring trends in cancer epidemiology, facilitating the implementation of effective cancer services. Adolescents and Young Adult (AYA) with cancer are a patient group with a unique set of needs. The utility of PBCR in AYA is limited by the lack of AYA-specific data items. STRONG AYA, an international multidisciplinary consortium is addressing this through federated learning (FL) methodology and novel data visualisation concepts. A Core Outcome Set (COS) has been developed to measure outcomes of importance through clinical data and Patient Reported Outcomes (PROs). We describe how data from the Yorkshire Specialist Register of Cancer in Children and Young People (YSRCCYP), a PBCR in the UK is being used within STRONG AYA and how the subsequent analyses can guide patient consultations. Methods: Data from the YSRCCYP were imported into a Vantage 6 node, from which FL analyses are performed along with data provided by other consortium members. The results are extracted into the PROMPT software and integrated into patient electronic healthcare records. Results: Healthcare professionals can view the results of individual PROs at various time points and in comparison, to summary analyses carried out within the STRONG AYA infrastructure. Results can be filtered by age, disease, country and stage. Conclusion: We have demonstrated how a regional PBCR can contribute to a pan-European infrastructure and analyses viewed to enhance patient consultations. Such analyses have the potential to be used for research and policy-making, improving outcomes for AYA.
Petalcorin, M. I. R.
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Background: Modern oncology development depends on integrating radiographic response, molecular biomarkers, treatment exposure, safety, and survival endpoints, yet access to well-structured patient-level trial data is often limited. Methods: We developed a synthetic, literature-informed phase II randomized oncology trial framework that followed the sequence Patient [->] Data [->] Dataset [->] Analysis [->] Tables/Figures [->] Decision. A cohort of randomized patients was simulated with baseline demographic and disease features, longitudinal tumor measurements, circulating tumor DNA, inflammatory and exploratory biomarkers, adverse events, treatment exposure, and survival outcomes. Raw source datasets were transformed into SDTM-like domains and ADaM-like analysis datasets, then analyzed for baseline characteristics, exposure, best overall response, survival, subgroup hazard ratios, longitudinal tumor and biomarker changes, exposure-response, and safety. Results: The treatment arm showed a coherent efficacy signal across multiple analytical layers. Treatment increased objective response and clinical benefit, reduced tumor burden over time, and prolonged survival. Median overall survival increased from 135 days in the control arm to 288 days in the treatment arm, with an approximate hazard ratio of 0.661 (95% CI, 0.480-0.911; p = 0.011). Median progression-free survival increased from 116 to 208 days, with an approximate hazard ratio of 0.601 (95% CI, 0.418-0.864; p = 0.006). Circulating tumor DNA showed a more favorable trajectory in treated patients and aligned directionally with radiographic and survival benefit. Safety analyses showed increased treatment-related toxicity, but the overall safety profile remained interpretable and compatible with continued development. Conclusions: This study demonstrates that a synthetic, literature-informed oncology trial can reproduce a biologically plausible and analytically coherent efficacy-safety signal architecture across radiographic, molecular, and time-to-event endpoints, providing a decision-oriented prototype for translational oncology clinical data science. Keywords: synthetic clinical trial, oncology, ctDNA, Kaplan-Meier, biomarker, survival analysis, translational data science, ADaM, SDTM
Peimankar, A.; Hossein Motlagh, N.; K. Khare, S.; Spicher, N.; Dominguez, H.; Abolghasemi, V.; Fujiwara, K.; Teichmann, D.; Rahmani, R.; Puthusserypady, S.
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Background: Atrial fibrillation (AFib) is the most common sustained arrhythmia in the world, imposing a heavy clinical and economic burden on global healthcare systems. Early detection of AFib can reduce mortality and morbidity, while helping to alleviate the growing economic burden of cardiovascular diseases. With the increasing availability of digital health technologies, computational solutions have great potential to support the timely diagnosis of cardiac abnormalities. Objectives: With the increasing availability of electrocardiogram (ECG) data from clinical and wearable devices, manual interpretation has become impractical due to its time-consuming and subjective nature. Existing automated approaches often rely on single classifiers or fixed ensembles that primarily optimize predictive accuracy while neglecting model diversity, which leads to limited robustness and generalization across heterogeneous datasets. Therefore, this study aims to develop a robust and diversity-aware framework for automatic AFib detection that simultaneously improves classification performance and model generalizability. To this end, we propose MOE-ECG, a multi-objective ensemble selection and fusion framework that explicitly optimizes both predictive performance and inter-model diversity for reliable AFib detection from ECG recordings. Methods: The proposed multi-objective ensemble (MOE) framework uses ensemble selection as a bi-objective optimization problem and employs multi-objective particle swarm optimization to identify complementary classifiers from a heterogeneous model pool. Unlike conventional ensembles, it explicitly optimizes both predictive performance and diversity and integrates Dempster-Shafer theory for uncertainty-aware decision fusion. After filtering the ECG signals to remove baseline wander and noise, they were segmented into windows of 20, 60, and 120 heartbeats with 50% overlap. The proposed approach was evaluated over five independent runs to assess its stability and generalization. Fifteen statistical and nonlinear features were obtained from the RR-intervals of the pre-processed ECG signals, of which eight features were selected with correlation analysis to capture subtle information from the ECG data. We trained and evaluated the performance of the proposed model in three open source databases, namely, the MIT-BIH Atrial Fibrillation Database, Saitama Heart Database Atrial Fibrillation, and Long-Term AF Database. Results: The proposed approach achieved the best overall performance on 60-beat segments, with an average accuracy of 89.85%, precision of 91.14%, recall of 94.19%, an F1-score of 92.64%, and area under the curve (AUC) of around 0.95. Statistical analysis using Holm-adjusted Wilcoxon tests confirmed significant improvements (p<0.05) compared to both the best individual classifier and the unoptimized average ensemble of all classifiers. These findings show that the proposed selection and evaluation methodology, rather than group aggregation alone, is the key driver of performance improvements. Conclusion: The results obtained demonstrate that the MOE-ECG model offers a robust, accurate, and reliable solution for the detection of AFib from short ECG segments. The empirical findings, in general, confirm that multi-objective ensemble fusion enhances diagnostic performance and offers robust predictions that will open up possibilities for real-time AFib detection in clinical and tele-health settings.
Agumba, J.; Erick, S.; Pembere, A.; Nyongesa, J.
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Abstract Objectives: To develop and evaluate a deployable deep learning system with Gradient-weighted Class Activation Mapping (Grad-CAM) for tuberculosis screening from chest radiographs and to assess its classification performance and explainability across desktop and mobile deployment platforms. Materials and methods: This study used publicly available chest X-ray datasets containing Normal and Tuberculosis images. A DenseNet121-based transfer learning model was trained using stratified training, validation, and test splits with data augmentation and class weighting. Model performance was evaluated using accuracy, precision, recall, F1 score, receiver operating characteristic (ROC) curve, and area under the ROC curve (AUC). Grad-CAM was used to visualize regions influencing model predictions. The trained model was converted to TensorFlow Lite and deployed in both a Windows desktop application and a Flutter-based mobile application for offline inference and visualization. Results: The model demonstrated strong classification performance on the independent test dataset, with high accuracy and AUC values indicating effective discrimination between Normal and Tuberculosis cases. Grad-CAM visualizations showed that the model focused primarily on anatomically relevant lung regions, particularly the upper and mid-lung fields in Tuberculosis cases. Deployment testing confirmed consistent prediction outputs and Grad-CAM visualizations across both Windows and mobile platforms. Conclusion: The proposed deployable deep learning system with Grad-CAM provides accurate and interpretable tuberculosis screening from chest radiographs and demonstrates feasibility for offline mobile and desktop deployment. This approach has potential as an artificial intelligence-assisted screening and decision support tool in radiology, particularly in resource-limited and remote healthcare settings.
Petalcorin, M. I. R.
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Background: Early-phase oncology development increasingly depends on integrated interpretation of clinical outcomes, translational biomarkers, and pharmacokinetic exposure rather than toxicity alone. This shift has created a need for reproducible analytical workflows that can combine heterogeneous trial data into traceable, analysis-ready outputs suitable for exploratory review and early decision support. Objective: To develop a reproducible Python-based workflow that simulates a plausible early-phase oncology study, integrates clinical, biomarker, and pharmacokinetic data, and generates analysis-ready datasets, visual summaries, and exploratory predictive models relevant to early development analytics. Methods: A workflow was constructed to simulate an early-phase oncology cohort of 120 patients distributed across multiple dose levels. Three synthetic raw data sources were generated, including patient-level clinical data, baseline biomarker data, and longitudinal pharmacokinetic profiles. These sources were merged into a single analysis-ready dataset containing derived variables such as tumor percent change from baseline, clinical-benefit status, exposure summaries, adverse-event indicators, and survival outcomes. The workflow produced structured tables, patient listings, waterfall plots, Kaplan-Meier-style survival curves, biomarker-response visualizations, pharmacokinetic profile plots, and exploratory machine-learning outputs. Results: The final integrated dataset contained 120 patients and 30 variables. Median survival across the simulated cohort was 243.8 days, and higher dose groups showed improved median survival and greater clinical benefit relative to the low-dose group. Clinical benefit increased from 8.6% in the low-dose group to 29.0% in the medium-dose group and 45.2% in the high-dose group. Higher baseline LDH, CRP, and ctDNA fraction tracked with less favorable tumor-response trajectories, whereas higher exposure, reflected by AUC and Cmax, associated with improved disease control. Pharmacokinetic profiles showed clear dose-dependent separation. Grade 3 or higher adverse-event rates remained within a plausible exploratory range across dose groups. A random-forest model for clinical benefit achieved an exploratory ROC AUC of 0.845, while a logistic-regression model for strict responder status could not be fit because no simulated patient met the prespecified objective response threshold. Conclusions: This proof-of-concept demonstrates that a transparent Python workflow can generate a coherent early-phase oncology analytical ecosystem from synthetic inputs. The workflow supports integration of heterogeneous data streams, derivation of analysis-ready variables, production of interpretable outputs, and exploratory modeling in a reproducible framework. Although the simulated responder prevalence was too low to support objective response modeling, this limitation itself highlights the importance of simulation calibration for downstream analytical validity. The framework provides a practical Health Informatics demonstration of how early oncology trial data can be structured and analyzed for exploratory translational decision support.
Dai, H.-J.; Mir, T. H.; Fang, L.-C.; Chen, C.-T.; Feng, H.-H.; Lai, J.-R.; Hsu, H.-C.; Nandy, P.; Panchal, O.; Liao, W.-H.; Tien, Y.-Z.; Chen, P.-Z.; Lin, Y.-R.; Jonnagaddala, J.
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Accurate recognition and deidentification of sensitive health information (SHI) in spoken dialogues requires multimodal algorithms that can understand medical language and contextual nuance. However, the recognition and deidentification risks expose sensitive health information (SHI). Additionally, the variability and complexity of medical terminology, along with the inherent biases in medical datasets, further complicate this task. This study introduces the SREDH/AI-Cup 2025 Medical Speech Sensitive Information Recognition Challenge, which focuses on two tasks: Task-1: Speech transcription systems must accurately transcribe speech into text; and Task-2: Medical speech de-identification to detect and appropriately classify mentions of SHI. The competition attracted 246 teams; top-performing systems achieved a mixed error rate (MER) of 0.1147 and a macro F1-score of 0.7103, with average MER and macro F1-score of 0.3539 and 0.2696, respectively. Results were presented at the IW-DMRN workshop in 2025. Notably, the results reveal that LLMs were prevalent across both tasks: 97.5% of teams adopted LLMs for Task 1 and 100% for Task 2. Highlighting their growing role in healthcare. Furthermore, we finetuned six models, demonstrating strong precision ([~]0.885-0.889) with slightly lower recall ([~]0.830-0.847), resulting in F1-scores of 0.857-0.867.
Spyretos, C.; Tampu, I. E.; Lindblad, J.; Haj-Hosseini, N.
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AO_SCPLOWBSTRACTC_SCPLOWThe classification of pediatric brain tumors is investigated using deep learning on hematoxylin and eosin (H&E) and antigen Ki-67 (Ki-67) whole slide images (WSIs) from the Childrens Brain Tumor Network (CBTN) dataset. A total of 1,662 unregistered WSIs (1,047 H&E and 615 Ki-67 images) were analyzed, including low-grade glioma/astrocytoma (grades 1, 2) (LGG), high-grade glioma/astrocytoma (grades 3, 4) (HGG), medulloblastoma (MB), ependymoma (EP) and ganglioglioma. The The aim of this study was to effectively classify pediatric brain tumors using H&E and Ki-67 WSIs individually, and to investigate whether early, intermediate, and late fusion could improve the predictive performance. From each WSI, 224x 224 pixel patches were extracted, and the instance (patch)-level features were obtained using the histology foundation model CONCHv1_5. The instances were aggregated using clustering-constrained attention multiple instance learning (CLAM) for patient-level classification. Model interpretability and explainability was assessed through attention heatmaps, cell density and Ki-67 labelling index (LI) maps. In the binary grade classification between LGG and HGG, the intermediate concatenation fusion achieved the best performance with a balanced accuracy of 0.88 {+/-} 0.05, (p < 0.005) compared to the single-stain models (H&E: 0.84 {+/-} 0.05, Ki-67: 0.86 {+/-} 0.05). For the 5-class tumor type classification, the one-hidden layer late fusion learning model achieved the highest balanced accuracy of 0.83 {+/-} 0.04 (p < 0.005), outperforming the single-stain models (H&E: 0.77 {+/-} 0.05, Ki-67: 0.74 {+/-} 0.05). Overall, most of the fusion approaches outperformed the single-stain models in both classification tasks (p < 0.005). The Ki-67 attention maps demonstrated moderate to strong Spearman correlation ({rho} = 0.576 - 0.823) with the cell density and Ki-67 LI maps, suggesting that these features are associated with the models predictions, although additional features may contribute. The results show that H&E and Ki-67 images provide complementary information, and most of the multi-stain fusion approaches using deep learning improve pediatric brain tumor diagnosis.
Purkayastha, D. S.
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Inadequate discharge communication is a well-documented contributor to medication non-adherence, missed follow-ups, and preventable readmissions across healthcare systems worldwide. In resource-limited oncology settings, where patients are often low-literate, speak non-dominant languages, and manage complex multi-drug regimens, this problem is acute and largely unaddressed. We present Aakhyan, a vernacular patient communication platform that addresses the full post-discharge arc: from converting English-language discharge summaries into structured, voice-based vernacular explanations, through medication adherence support, to proactive follow-up management - all delivered via WhatsApp. The architecture is novel in its strict separation of concerns: a vision-language model performs structured JSON extraction from discharge images; all patient-facing content is generated deterministically from clinician-approved templates with community-sensitive vocabulary registers. This design eliminates the hallucination risk inherent in generative AI patient communication (documented at 18-82% in prior studies) while preserving the extraction capability of large language models. The platform supports four language registers, Bengali, Hindi, simplified English for tribal populations, and Assamese, with text-to-speech synthesis across all registers, including a custom grapheme-to-phoneme engine developed for Assamese phonology. Beyond discharge communication, the platform includes scheduled medication adherence nudges, interactive follow-up reminders, and a Daily Availability and Patient Notification System (DAPNS) that notifies patients the evening before their follow-up whether their doctor and required investigations are available, preventing wasted trips by rural patients who travel 2-6 hours to reach the centre. A 100-patient stratified randomised controlled study is planned at Silchar Cancer Centre, with structured teach-back assessment at 48-72 hours post-discharge as the primary comprehension outcome and preliminary clinical efficacy as a secondary objective. This paper describes the clinical rationale, technical architecture, safety framework, and positioning of Aakhyan within the existing literature on mHealth patient communication interventions.
Abdolahnejad, M.; Kyremeh, M.; Smith, J.; Fang, G.; Chan, H. O.; Joshi, R.; Hong, C.
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Background: Atopic dermatitis (AD) is a prevalent chronic inflammatory skin disease associated with clinical, psychosocial, and economic burden. Accurate severity assessment is essential for guiding treatment escalation and monitoring disease activity, yet clinician-based scoring systems such as the Eczema Area and Severity Index (EASI) are limited by subjectivity and considerable inter- and intra-rater variability. Erythema, a key driver of AD severity grading, is particularly prone to inconsistent evaluation due to differences in ambient lighting, device quality, skin tone, and rater experience, underscoring the need for objective, reproducible assessment tools. Objective: To develop and validate an artificial intelligence (AI) pipeline for grading erythema, excoriation, and lichenification severity in AD from clinical photographs. The study evaluated the level of agreement between AI severity ratings in each category against dermatologists, non-specialists, and a consensus reference standard, with erythema as the primary outcome of interest. Methods: A two-stage AI pipeline was developed using EfficientNet B7 convolutional neural networks (CNNs). The first CNN was trained as a binary AD classifier on 451 AD and 601 non-AD images for lesion detection and segmentation. The second CNN was trained on 173 dermatologist-annotated AD images which were scored on a 0-3 ordinal scale for erythema, excoriation, and lichenification. This CNN had a downstream feature extraction algorithms such red channel contrast for erythema, Law's E5L5 for excoriation, and S5L5 texture maps for lichenification. In a cross-sectional validation study, 41 independent test images were scored by two blinded dermatologists and two blinded physicians. AI predictions were compared to individual rater groups and mode-derived consensus scores using weighted Cohen's kappa, classification accuracy, confusion matrices, and error direction analyses. Results: On internal validation, the severity CNN achieved 84% overall accuracy (averaged across all three attributes), 86% sensitivity, 87% specificity, and a macro-averaged area under the receiver operating characteristic curve (AUC) of 0.90. In the external comparison with blinded human raters, erythema agreement between the AI and dermatologist consensus was substantial (accuracy 80.7%; kappa = 0.68), with no large (>2-point) misclassifications. Physician consensus agreement was lower (accuracy 54.8%; kappa = 0.34), reflecting greater variability among primary care physicians (non-specialists). For excoriation, AI-dermatologist agreement was moderate (accuracy 72.4%; kappa = 0.62); for lichenification, agreement was similar (accuracy 71.4%; kappa = 0.59). Across all features, disagreements were predominantly between adjacent severity categories. The AI was able to generate erythema severity grades for images of darker skin tones that dermatologists typically would not rate and were marked as "unable to assess". Limitations: The validation set was small (41 images), severe cases (score 3) were underrepresented, one rater participated in both training annotation and validation scoring, and sample size was insufficient for robust stratification by skin tone or body site. Conclusion: The AI pipeline demonstrated dermatologist-level accuracy for erythema scoring, consistent moderate agreement for excoriation and lichenification, and a potential advantage in assessing erythema on darker skin tones. These findings support its potential as a standardized, objective tool for AD severity assessment. Prospective validation in larger, more diverse cohorts is warranted.